Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs1896513 chr10:88195650 C/T 1.18E-14 298 3.33 24.9 21.17 KM Plot
CESC rs1909065 chr1:217483198 G/A 5.64E-5 293 21.4 24 11.83 KM Plot
CESC rs191393391 chr3:129235701 G/C 4.63E-5 294 21.85 20.63 14.73 KM Plot
CESC rs1923534 chr10:81710485 A/G 4.01E-9 297 25.17 16.42 2.62 KM Plot
CESC rs199626916 chr1:59085139 G/GA 9.46E-6 289 21.2 24.9 15.62 KM Plot
CESC rs199677100 chr11:3007612 AAAAAAG/A 8.72E-5 293 21.4 21.2 21.43 KM Plot
CESC rs200104573 chr10:81734810 T/TG 4.15E-9 298 25.17 16.47 2.62 KM Plot
CESC rs2004760 chr1:26029888 G/A 2.53E-14 292 21.23 26.43 3.33 KM Plot
CESC rs200640014 chr1:112305437 T/TTTAAGGGGAGG 0 298 21.33 20.47 4.07 KM Plot
CESC rs200994033 chr17:29070934 G/T 0 288 21.2 21.08 2.47 KM Plot
CESC rs201592406 chr11:33061641 CG/C 1.23E-6 293 21.85 24.9 1.7 KM Plot
CESC rs2038922 chr10:9867908 C/T 8.32E-8 299 11.67 18.1 22.93 KM Plot
CESC rs2054710 chr3:161090616 C/T 1.1E-6 289 24 19.98 19.2 KM Plot
CESC rs2071110 chr11:2991219 C/G 1.66E-5 291 21.13 22.88 21.73 KM Plot
CESC rs2096185 chr9:115566691 T/C 4.42E-9 298 8 19.43 23.12 KM Plot